modified stacks schema

docker/aplicativos_en_c/stacks/compile_docker_image.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+if [ -z "$1" ]; then
+    echo "A name for the image is needed"
+    exit 1
+fi
+
+docker login -u cibiofi -p cibiofi 192.168.27.25:5000 
+docker build -t 192.168.27.25:5000/$(whoami)/$1 .
+docker push 192.168.27.25:5000/$(whoami)/$1

docker/aplicativos_en_c/stacks/condor.submit

@@ -0,0 +1,10 @@
+Universe = docker
+docker_image = 192.168.27.25:5000/millan.ana/stacks
+should_transfer_files = Yes
+transfer_input_files = run.sh
+Executable = /bin/bash
+Arguments = run.sh
+Log = stacks_log.log
+Output = stacks_out.out
+Error = stacks_err.err
+Queue

docker/aplicativos_en_c/stacks/run.sh

@@ -0,0 +1,4 @@
+#!/bin/bash
+echo "Process start"
+process_radtags -p /datos/millana/datos/SpavirSAN41.fastq -o /datos/millana/datos/demulti -b /datos/millana/datos/barcodes.txt -e sbfI -r -c -q
+echo "Process end"