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modified stacks schema

master
Mauricio Collazos 4 years ago
parent
commit
2be3171543

docker/aplicativos_en_c/Dockerfile → docker/aplicativos_en_c/stacks/Dockerfile View File


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docker/aplicativos_en_c/stacks/compile_docker_image.sh View File

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+#!/bin/bash
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+
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+if [ -z "$1" ]; then
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+    echo "A name for the image is needed"
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+    exit 1
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+fi
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+
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+docker login -u cibiofi -p cibiofi 192.168.27.25:5000 
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+docker build -t 192.168.27.25:5000/$(whoami)/$1 .
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+docker push 192.168.27.25:5000/$(whoami)/$1

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docker/aplicativos_en_c/stacks/condor.submit View File

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+Universe = docker
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+docker_image = 192.168.27.25:5000/millan.ana/stacks
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+should_transfer_files = Yes
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+transfer_input_files = run.sh
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+Executable = /bin/bash
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+Arguments = run.sh
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+Log = stacks_log.log
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+Output = stacks_out.out
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+Error = stacks_err.err
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+Queue

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docker/aplicativos_en_c/stacks/run.sh View File

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+#!/bin/bash
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+echo "Process start"
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+process_radtags -p /datos/millana/datos/SpavirSAN41.fastq -o /datos/millana/datos/demulti -b /datos/millana/datos/barcodes.txt -e sbfI -r -c -q
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+echo "Process end"

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